Stem-loop aca-mir-196c

Accession

MI0018793

Description

Anolis carolinensis aca-mir-196c precursor miRNA

Sequence

ccuagaacuguucuguggauUAGGUAGUUUCACGUUGUUGGGaauucauuuuuaacacACAAGAACAUAAAACUACCUGAuuuacuccaguuuau
....((((((....((((((((((((((((...(((.(((...................))).)))...))))))))))))))))..))))))..

Structure

ccua      uucu                CAC   G   GGaauuca 
    gaacug    guggauUAGGUAGUUU   GUU UUG        u
    ||||||    ||||||||||||||||   ||| |||        u
    uuugac    cauuuAGUCCAUCAAA   CAA AAC        u
--ua      --cu                AUA   G   Acacaauu 

Annotation confidence Not enough data

Genome context

chr6: 75666539-75666633 [-]

Mature aca-miR-196c-5p

• Accession: MIMAT0021832
• Description: Anolis carolinensis aca-miR-196c-5p mature miRNA
• Sequence: 21 - UAGGUAGUUUCACGUUGUUGGG - 42
• Evidence: experimental ; Illumina [1]

Mature aca-miR-196c-3p

• Accession: MIMAT0021833
• Description: Anolis carolinensis aca-miR-196c-3p mature miRNA
• Sequence: 59 - ACAAGAACAUAAAACUACCUGA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107