Stem-loop aca-mir-204a-1

Accession

MI0018806

Description

Anolis carolinensis aca-mir-204a-1 precursor miRNA

Sequence

6917 reads, 2345.0 reads per million, 2 experiments

ggaucacaugaccugugggcUUCCCUUUGUCAUCCUAUGCCUggagaucgcagagagGCAGGGACAGCAAAGGGGUGCUcagcuguugucucuaac
.......(((((...(((((.(((((((((..((((.(((((.............)))))))))..))))))))).)))))...))))).......

Structure

ggaucac     cug     U         CA    A     ggaga 
       augac   ugggc UCCCUUUGU  UCCU UGCCU     u
       |||||   ||||| |||||||||  |||| |||||     c
       uguug   acUCG GGGGAAACG  AGGG ACGga     g
caaucuc     ucg     U         AC    -     gagac 

Annotation confidence High

Genome context

GL343428.1: 107538-107633 [-]

Mature aca-miR-204a-5p

• Accession: MIMAT0021853
• Description: Anolis carolinensis aca-miR-204a-5p mature miRNA
• Sequence: 21 - UUCCCUUUGUCAUCCUAUGCCU - 42
• Evidence: experimental ; Illumina [1]

Mature aca-miR-204a-1-3p

• Accession: MIMAT0057916
• Description: Anolis carolinensis aca-miR-204a-1-3p mature miRNA
• Sequence: 58 - GCAGGGACAGCAAAGGGGUGCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107