miRBase entry: aca-mir-210

Stem-loop aca-mir-210


Accession
MI0018815
Description
Anolis carolinensis aca-mir-210 precursor miRNA


Sequence

1535 reads, 543.0 reads per million, 2 experiments
ccaguucuccaggagcagaugAGCCACUGACUAACGCACAUUGUGcuucucguguccccaCUGUGCGUGUGACAGCGGCUAAccugcuuuucggac
.......(((((((((((...((((.(((.(..(((((((.((.((.......))...)).)))))))..).))).))))...)))))))).))).

Structure
ccaguuc   -        aug    A   A UA       U  --U  uu 
       ucc aggagcag   AGCC CUG C  ACGCACA UG   Gc  c
       ||| ||||||||   |||| ||| |  ||||||| ||   ||  u
       agg uuuucguc   UCGG GAC G  UGCGUGU ac   ug  c
------c   c        cAA    C   A UG       C  ccc  ug 


Annotation confidence High
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Genome context
chr1: 74505514-74505609 [+]

Database links

Mature aca-miR-210-5p

Accession MIMAT0021867
Description Anolis carolinensis aca-miR-210-5p mature miRNA
Sequence 22 - AGCCACUGACUAACGCACAUUGUG - 45
Evidence experimental
Illumina [1]

Mature aca-miR-210-3p

Accession MIMAT0021868
Description Anolis carolinensis aca-miR-210-3p mature miRNA
Sequence 61 - CUGUGCGUGUGACAGCGGCUAA - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107