Stem-loop aca-mir-2188

Accession

MI0018824

Description

Anolis carolinensis aca-mir-2188 precursor miRNA

Literature search

2 open access papers mention aca-mir-2188
(2 sentences)

Sequence

1265 reads, 435.0 reads per million, 2 experiments

ggacaucaucacacuuguggucAAGGUCCAACCUCACGUGUCCUguaugcgauaaaagaggGAUGCGUGUGGUCAGACCUAGCccacaagcccuguaug
......(((.((((((((((.(.(((((..(((.((((((((((...(........)..)))))))))).)))..))))).).)))))))...))))))

Structure

ggacau   c   ---       u A     CA   U          gua gcg 
      cau aca   cuugugg c AGGUC  ACC CACGUGUCCU   u   a
      ||| |||   ||||||| | |||||  ||| ||||||||||   |    
      gua ugu   gaacacc G UCCAG  UGG GUGCGUAGgg   a   u
------   -   ccc       C A     AC   U          -ag aaa 

Annotation confidence High

Genome context

GL343545.1: 105058-105156 [-]

Mature aca-miR-2188-5p

• Accession: MIMAT0021882
• Description: Anolis carolinensis aca-miR-2188-5p mature miRNA
• Sequence: 23 - AAGGUCCAACCUCACGUGUCCU - 44
• Evidence: experimental ; Illumina [1]

Mature aca-miR-2188-3p

• Accession: MIMAT0021883
• Description: Anolis carolinensis aca-miR-2188-3p mature miRNA
• Sequence: 62 - GAUGCGUGUGGUCAGACCUAGC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107