Stem-loop aca-mir-221

Accession

MI0018828

Description

Anolis carolinensis aca-mir-221 precursor miRNA

Sequence

4264 reads, 1472.0 reads per million, 2 experiments

uuggggccugaACCUGGCAUACAAUGUAGAAUUcuguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUCaggcugucu
..(.(((((((((((((((.(((((((((....(((((.((...)))))))))))))))).))))))).)))))))).)..

Structure

uu g        -       U         AAUU     u  u 
  g ggccugaA CCUGGCA ACAAUGUAG    cuguu gu  
  | |||||||| ||||||| |||||||||    ||||| || a
  u ucggaCUU GGGUCGU UGUUACAUC    GAcaa cg  
uc g        U       C         ----     -  a 

Annotation confidence High

Genome context

chr3: 135996379-135996459 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-221

Mature aca-miR-221-5p

• Accession: MIMAT0021889
• Description: Anolis carolinensis aca-miR-221-5p mature miRNA
• Sequence: 12 - ACCUGGCAUACAAUGUAGAAUU - 33
• Evidence: experimental ; Illumina [1]

Mature aca-miR-221-3p

• Accession: MIMAT0021890
• Description: Anolis carolinensis aca-miR-221-3p mature miRNA
• Sequence: 50 - AGCUACAUUGUCUGCUGGGUUUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107