miRBase entry: aca-mir-24-1

Stem-loop aca-mir-24-1

Accession

MI0018833

Description

Anolis carolinensis aca-mir-24-1 precursor miRNA

Sequence

ugcagggcuuggccuuccgUGCCUACUGAGCUGAUACUCAGUugcuuuagauaaacUGGCUCAGUUCAGCAGGAACAGgaguccagcccaguc
.((.(((((.((.((((.((.(((.(((((((((...((((((..........)))))).))))))))).))).)).)))).))))))).)).

Structure

u  a     u  c    c  G   A         UAC      gcuu 
 gc gggcu gg cuuc gU CCU CUGAGCUGA   UCAGUu    u
 || ||||| || |||| || ||| |||||||||   ||||||     
 ug cccga cc gagG CA GGA GACUUGACU   GGUcaa    a
c  a     -  u    A  A   C         --C      auag

Annotation confidence Not enough data

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Genome context

chr2: 29157637-29157729 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-24-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-24-1-5p

Accession	MIMAT0021899
Description	Anolis carolinensis aca-miR-24-1-5p mature miRNA
Sequence	20 - UGCCUACUGAGCUGAUACUCAGU - 42
Evidence	experimental Illumina [1]

Mature aca-miR-24-3p

Accession	MIMAT0021900
Description	Anolis carolinensis aca-miR-24-3p mature miRNA
Sequence	57 - UGGCUCAGUUCAGCAGGAACAG - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107