Stem-loop aca-mir-27a

Accession

MI0018837

Description

Anolis carolinensis aca-mir-27a precursor miRNA

Literature search

1 open access papers mention aca-mir-27a
(1 sentences)

Sequence

12626 reads, 4345.0 reads per million, 2 experiments

agccguAGGGCUUAGCCCACCUGUGAACAgcauuggauucagccaugUUCACAGUGGCUAAGUUCCGCUGcuu
(((.((.((((((((((...(((((((((....(((......)))))))))))).)))))))))).)).))).

Structure

-   c  A          CAC         gcau   au 
 agc gu GGGCUUAGCC   CUGUGAACA    ugg  u
 ||| || ||||||||||   |||||||||    |||   
 ucG CG CUUGAAUCGG   GACACUUgu    acc  c
u   U  C          --U         ----   ga 

Annotation confidence High

Genome context

chr2: 29157932-29158004 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-27a

Mature aca-miR-27a-5p

• Accession: MIMAT0021905
• Description: Anolis carolinensis aca-miR-27a-5p mature miRNA
• Sequence: 7 - AGGGCUUAGCCCACCUGUGAACA - 29
• Evidence: experimental ; Illumina [1]

Mature aca-miR-27a-3p

• Accession: MIMAT0021906
• Description: Anolis carolinensis aca-miR-27a-3p mature miRNA
• Sequence: 48 - UUCACAGUGGCUAAGUUCCGCUG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107