Stem-loop aca-mir-30c-1

Accession

MI0018849

Description

Anolis carolinensis aca-mir-30c-1 precursor miRNA

Sequence

39929 reads, 13870.0 reads per million, 2 experiments

ccaagugacagguaaUGUAAACAUCCUACACUCUCAGCUguguagauaagaagaaagCUGGGAGAAGGCUGUUUACUCUcucugccuuggaaa
(((((.(.((((....(((((((.(((...(((((((((................))))))))).))).)))))))....))))))))))...

Structure

---     u a    uaaU       U   ACA         guguaga 
   ccaag g cagg    GUAAACA CCU   CUCUCAGCU       u
   ||||| | ||||    ||||||| |||   |||||||||        
   gguuc c gucu    CAUUUGU GGA   GAGGGUCga       a
aaa     - -    cUCU       C   --A         aagaaga 

Annotation confidence High

Genome context

chr1: 168132504-168132596 [-]

Mature aca-miR-30c-5p

• Accession: MIMAT0021924
• Description: Anolis carolinensis aca-miR-30c-5p mature miRNA
• Sequence: 16 - UGUAAACAUCCUACACUCUCAGCU - 39
• Evidence: experimental ; Illumina [1]

Mature aca-miR-30c-3p

• Accession: MIMAT0021925
• Description: Anolis carolinensis aca-miR-30c-3p mature miRNA
• Sequence: 58 - CUGGGAGAAGGCUGUUUACUCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107