miRBase entry: aca-mir-30d

Stem-loop aca-mir-30d

Accession

MI0018850

Description

Anolis carolinensis aca-mir-30d precursor miRNA

Sequence

acaguagucuguuguUGUAAACAUCCCCGACUGGAAGcuguaaauuucagcUUUCAGUCAGAUGUUUGCUGCcaccggcuauuca
..(((((((.((.((.(((((((((...((((((((((((.......)))))))))))).))))))))).)).)).)))))))..

Structure

ac       u  u  U         CCC            ua 
  aguaguc gu gu GUAAACAUC   GACUGGAAGcug  a
  ||||||| || || |||||||||   ||||||||||||  a
  uuaucgg ca CG CGUUUGUAG   CUGACUUUcgac  u
ac       c  c  U         --A            uu

Annotation confidence Not enough data

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Genome context

chr4: 1751109-1751193 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-30d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-30d-5p

Accession	MIMAT0021926
Description	Anolis carolinensis aca-miR-30d-5p mature miRNA
Sequence	16 - UGUAAACAUCCCCGACUGGAAG - 37
Evidence	experimental Illumina [1]

Mature aca-miR-30d-3p

Accession	MIMAT0021927
Description	Anolis carolinensis aca-miR-30d-3p mature miRNA
Sequence	52 - UUUCAGUCAGAUGUUUGCUGC - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107