Stem-loop aca-mir-460b

Accession

MI0018876

Description

Anolis carolinensis aca-mir-460b precursor miRNA

Sequence

127 reads, 45.0 reads per million, 2 experiments

ggacuccaucuugCCCUCAUUGUACAUGCUGUGUGuauuccuuuggcguaCACAGCGCAUGCAAUGUGGAcaggagggaggccg
((.((((.(((((.((.(((((..(((((..(((((((.((...)).)))))))..)))))))))).)).))))).)))).)).

Structure

-  a    a     C  U     UA     UG       u  u 
 gg cucc ucuug CC CAUUG  CAUGC  UGUGuau cc  
 || |||| ||||| || |||||  |||||  ||||||| || u
 cc gagg aggac GG GUAAC  GUACG  ACACaug gg  
g  g    g     A  U     --     CG       c  u 

Annotation confidence High

Genome context

GL343403.1: 879921-880004 [-]

Mature aca-miR-460b-5p

• Accession: MIMAT0021972
• Description: Anolis carolinensis aca-miR-460b-5p mature miRNA
• Sequence: 14 - CCCUCAUUGUACAUGCUGUGUG - 35
• Evidence: experimental ; Illumina [1]

Mature aca-miR-460b-3p

• Accession: MIMAT0021973
• Description: Anolis carolinensis aca-miR-460b-3p mature miRNA
• Sequence: 51 - CACAGCGCAUGCAAUGUGGA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107