Stem-loop aca-mir-7-3

Accession

MI0018884

Description

Anolis carolinensis aca-mir-7-3 precursor miRNA

Sequence

2745 reads, 921.0 reads per million, 2 experiments

uugcccugcuucuuaUGGAAGACUAGUGAUUUUGUUGUUcuguaguucaucucacgaCAACAAGUCACAGUCUGCCUUAuggggccuggccuc
..(((..(((((.((.((.(((((.(((((((.((((((.((.((.....)))).)))))))))))))))))).)).)).)))))..)))...

Structure

-uu   cu     u  U  A     A       U      c  u  u 
   gcc  gcuuc ua GG AGACU GUGAUUU GUUGUU ug ag u
   |||  ||||| || || ||||| ||||||| |||||| || || c
   cgg  cgggg AU CC UCUGA CACUGAA CAACag ac uc a
cuc   uc     u  U  G     -       -      c  -  u 

Annotation confidence High

Genome context

GL343844.1: 159566-159658 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-7-3

Mature aca-miR-7-5p

• Accession: MIMAT0021983
• Description: Anolis carolinensis aca-miR-7-5p mature miRNA
• Sequence: 16 - UGGAAGACUAGUGAUUUUGUUGUU - 39
• Evidence: experimental ; Illumina [1]

Mature aca-miR-7-3-3p

• Accession: MIMAT0057921
• Description: Anolis carolinensis aca-miR-7-3-3p mature miRNA
• Sequence: 58 - CAACAAGUCACAGUCUGCCUUA - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107