Stem-loop aca-mir-9-1

Accession

MI0018888

Description

Anolis carolinensis aca-mir-9-1 precursor miRNA

Literature search

1 open access papers mention aca-mir-9-1
(2 sentences)

Sequence

5085 reads, 1796.0 reads per million, 2 experiments

ggaagcgaguuguugUCUUUGGUUAUCUAGCUGUAUGAguguguuggucuucaUAAAGCUAGAUAACCGAAAGUAaaaacuccuuca
.((((.(((((.(((.((((((((((((((((.((((((.(.......))))))).)))))))))))).))))))).))))))))).

Structure

g    c     g   U    -            G      u ug 
 gaag gaguu uug CUUU GGUUAUCUAGCU UAUGAg g  u
 |||| ||||| ||| |||| |||||||||||| |||||| |  u
 cuuc cucaa aAU GAAA CCAAUAGAUCGA AUacuu c  g
a    -     a   -    G            A      - ug 

Annotation confidence High

Genome context

chr2: 21612993-21613079 [-]

Mature aca-miR-9-5p

• Accession: MIMAT0021990
• Description: Anolis carolinensis aca-miR-9-5p mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
• Evidence: experimental ; Illumina [1]

Mature aca-miR-9-1-3p

• Accession: MIMAT0021991
• Description: Anolis carolinensis aca-miR-9-1-3p mature miRNA
• Sequence: 54 - UAAAGCUAGAUAACCGAAAGUA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107