miRBase entry: aca-mir-92a-1

Stem-loop aca-mir-92a-1


Accession
MI0018891
Description
Anolis carolinensis aca-mir-92a-1 precursor miRNA


Sequence

53575 reads, 18554.0 reads per million, 2 experiments
uacacAGGUUGGGAUUGGUUGCAAUGCUgucuauguguauguggUAUUGCACUUGUCCCGGCCUGUug
...((((((((((((.(((.(((((((((.(.........))))))))))))).))))))))))))..

Structure
uac            U   U         u uau 
   acAGGUUGGGAU GGU GCAAUGCUg c   g
   |||||||||||| ||| ||||||||| |   u
   UGUCCGGCCCUG UCA CGUUAUggu g   g
-gu            U   -         - uau 


Annotation confidence High
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Genome context
GL343584.1: 108945-109012 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from aca-mir-92a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-92a-1-5p

Accession MIMAT0057923
Description Anolis carolinensis aca-miR-92a-1-5p mature miRNA
Sequence 6 - AGGUUGGGAUUGGUUGCAAUGCU - 28
Evidence experimental
Illumina [1]

Mature aca-miR-92a-3p

Accession MIMAT0021993
Description Anolis carolinensis aca-miR-92a-3p mature miRNA
Sequence 45 - UAUUGCACUUGUCCCGGCCUGU - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107