Stem-loop aca-mir-5394

Accession

MI0018896

Description

Anolis carolinensis aca-mir-5394 precursor miRNA

Sequence

ccaagcugACCAUGAACCUCUGUCUAAGCUcauggccuuugugauauuaacUUGGACAGAGCUAAAUGGCCagcuagg
((.(((((.((((....(((((((((((...((.((....)).)).....)))))))))))....)))).))))).))

Structure

  a     A    GAAC           --CUc  g  c 
cc agcug CCAU    CUCUGUCUAAG     au gc u
|| ||||| ||||    |||||||||||     || ||  
gg ucgaC GGUA    GAGACAGGUUc     ua ug u
  a     C    AAUC           aauua  g  u 

Annotation confidence Not enough data

Genome context

chr1: 208190484-208190561 [+]

Mature aca-miR-5394-5p

• Accession: MIMAT0022000
• Description: Anolis carolinensis aca-miR-5394-5p mature miRNA
• Sequence: 9 - ACCAUGAACCUCUGUCUAAGCU - 30
• Evidence: experimental ; Illumina [1]

Mature aca-miR-5394-3p

• Accession: MIMAT0022001
• Description: Anolis carolinensis aca-miR-5394-3p mature miRNA
• Sequence: 52 - UUGGACAGAGCUAAAUGGCC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107