Stem-loop aca-mir-5399

Accession

MI0018901

Description

Anolis carolinensis aca-mir-5399 precursor miRNA

Literature search

1 open access papers mention aca-mir-5399
(1 sentences)

Sequence

263 reads, 89.0 reads per million, 2 experiments

guuggccagaagaCCAGAUUAUUUGUUGCUGUGCAAUUguuuuguauaaaaUUGCAAGAGAAAUAGUCUGACAUucugacuuau
...((.(((((...((((((((((.(((((((((((.....))))))).....))))...))))))))))...))))).))...

Structure

guu  c     gaC          --G    -----       U 
   gg cagaa   CAGAUUAUUU   UUGC     UGUGCAA U
   || |||||   ||||||||||   ||||     ||||||| g
   uc gucuU   GUCUGAUAAA   AACG     auauguu u
uau  a     ACA          GAG    UUaaa       u 

Annotation confidence High

Genome context

chr3: 25386679-25386762 [-]

Mature aca-miR-5399-5p

• Accession: MIMAT0022008
• Description: Anolis carolinensis aca-miR-5399-5p mature miRNA
• Sequence: 14 - CCAGAUUAUUUGUUGCUGUGCAAUU - 38
• Evidence: experimental ; Illumina [1]

Mature aca-miR-5399-3p

• Accession: MIMAT0022009
• Description: Anolis carolinensis aca-miR-5399-3p mature miRNA
• Sequence: 52 - UUGCAAGAGAAAUAGUCUGACAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107