Stem-loop aca-mir-5409

Accession

MI0018912

Description

Anolis carolinensis aca-mir-5409 precursor miRNA

Sequence

acuauacuauagcugcuuGUAUGGCUGAACAGGCAAGCUgccuuaagcucaugaguagcuugaguguucagccuuuuaagcaacuauaguagaa
....((((((((.((((((...(((((((((..((((((((.(((......)))))))))))..)))))))))...)))))).))))))))...

Structure

acua        c      UAU         GG        c   ag 
    uacuauag ugcuuG   GGCUGAACA  CAAGCUgc uua  c
    |||||||| ||||||   |||||||||  |||||||| |||   
    augauauc acgaau   ccgacuugu  guucgaug agu  u
-aag        a      uuu         ga        -   ac 

Annotation confidence Low

Genome context

chr5: 115113978-115114071 [-]

Mature aca-miR-5409

• Accession: MIMAT0022026
• Description: Anolis carolinensis aca-miR-5409 mature miRNA
• Sequence: 19 - GUAUGGCUGAACAGGCAAGCU - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107