miRBase entry: amg-MIR319

Stem-loop amg-MIR319


Accession
MI0018986
Description
Acacia mangium amg-MIR319 precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
1 open access papers mention amg-MIR319
(6 sentences)

Sequence

aaggagcuuccuucaguccacucauggauaggguaaaggguuugaauuagcugcugacucauucauucaaacacaauagaacacagguuucuucaauacaggcuauugugaaugugugaaugaugcaggagguaaauuucauccuuuucuugucuuugcUUGGACUGAAGGGAGCUCCCUuu
..((((((((((((((((((..((.((((((((.(((((((..((.(((.((.(((..((((((((.((..((((((((.......(......)........))))))))..)).))))))))..))).)).))).))..))))))))))))))).))..))))))))))))))))))....

Structure
--aa                  cu  u        u       uu  a   g  g   ac        u  aa        -aacacag uu 
    ggagcuuccuucagucca  ca ggauaggg aaagggu  ga uua cu cug  ucauucau ca  cacaauag        g  u
    ||||||||||||||||||  || |||||||| |||||||  || ||| || |||  |||||||| ||  ||||||||        |   
    CCUCGAGGGAAGUCAGGU  gu ucuguucu uuuccua  uu aau ga gac  aguaagug gu  guguuauc        c  c
uuUC                  Uc  u        -       cu  a   g  g   gu        u  aa        ggacauaa uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature amg-miR319

Accession MIMAT0022679
Description Acacia mangium amg-miR319 mature miRNA
Sequence 160 - UUGGACUGAAGGGAGCUCCCU - 180
Evidence not_experimental

References

  1. PubMed ID: 21729267
    Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
    Wong MM, Cannon CH, Wickneswari R
    BMC Genomics (2011) 12:342