Stem-loop pti-MIR5474

Accession

MI0018992

Description

Phaeodactylum tricornutum pti-MIR5474 precursor miRNA

Sequence

gaguggcguuccccguuugcauuuccgucaacgacauugucugcaaucauucgcccuugccaaacgaagaacggguaagugccgucccaugugguauagagaaaaauggcguaccugccguacaaaauAACCUGUGGUGGUCGACACAAGuaugccacga
..(((((((..(((((((........(.((((((.((((....))))...)))...))))........)))))))...(((.(((((((((.(((.((.......(((((......)))))......)))))))))).)).)).)))....)))))))..

Structure

ga       uccccguuugcauuuccgucaacgacauugucugcaaucauucgcccuugccaaacgaagaacggguaa   c  -  -     u   a  gagaaaa     gu 
  guggcgu                                                                     gug cg uc ccaug ggu ua       auggc  a
  |||||||                                                                     ||| || || ||||| ||| ||       |||||   
  caccgua                                                                     CAC GC GG GGUGU CCA Au       ugccg  c
ag       -----------------------------------------------------------------uGAA   A  U  U     -   -  -aaaaca     uc 

Annotation confidence Not enough data

Genome context

CM000617.1: 663006-663165 [+]

Mature pti-miR5474

• Accession: MIMAT0022107
• Description: Phaeodactylum tricornutum pti-miR5474 mature miRNA
• Sequence: 129 - AACCUGUGGUGGUCGACACAAG - 150
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21718527
   Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis
   Huang A, He L, Wang G
   BMC Genomics (2011) 12:337