Stem-loop osa-MIR5484

Accession

MI0019002

Description

Oryza sativa osa-MIR5484 precursor miRNA

Literature search

1 open access papers mention osa-MIR5484
(3 sentences)

Sequence

1947 reads, 13.0 reads per million, 67 experiments

ggcggccggcuGCGGCGACGGCGGCUUGGaugggucgccuuccucccuugcugcucggaugaacccucgccgcaugcaucgcgaucuugauauucuuggcauggaauuaauagcgucucuuuuuuaucccccuuacgguucuugaucuccagcgcuucucugaauucucugguucuucuugcucgcucaauuuacuuguuuuguuuucucgauugauugguugccugaucagcugugcuguggaugcaugcgauguugcaaAACCGAGCGCGCUGUUGAUUAaucuuaucuc
(((((((((((((((((((((((((..((..(((......)))..))..))))).)).........)))))))).))...((((.(..((.......(.((.((((((...((((.((.....(((....((....))....))).....))))))......)))))).)).)...))..).))))((((((..................)))))).))))))))((((((((((((((.(((.((((........))))...)))))))))..))))))))..........

Structure

ggcggccggcuGCGGCGACGGCGGCUUGGaugggucgccuuccucccuugcugcucggaugaacccucgccgcaugcaucgcgaucuugauauucuuggcauggaauuaauagcgucucuuuuuuaucccccuuacgguucuugaucuccagcgcuucucugaauucucugguucuucuugcucgcucaauuuacuuguuuuguuuucucgauugauugguugcc   ucagcugugcuguggaugcaugcg 
                                                                                                                                                                                                                                 uga                        a
                                                                                                                                                                                                                                 |||                        u
                                                                                                                                                                                                                                 AUU                        g
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cucuauucua   AGUUGUCGCGCGAGCCAAaacguu 

Annotation confidence Low

Genome context

2: 7796922-7797213 [-]

Mature osa-miR5484-5p

• Accession: MIMAT0056200
• Description: Oryza sativa osa-miR5484-5p mature miRNA
• Sequence: 12 - GCGGCGACGGCGGCUUGG - 29
• Evidence: experimental ; unknown

Mature osa-miR5484-3p

• Accession: MIMAT0022117
• Description: Oryza sativa osa-miR5484-3p mature miRNA
• Sequence: 262 - AACCGAGCGCGCUGUUGAUUA - 282
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53