Stem-loop osa-MIR5485

Accession

MI0019003

Description

Oryza sativa osa-MIR5485 precursor miRNA

Literature search

3 open access papers mention osa-MIR5485
(9 sentences)

Sequence

23274 reads, 73.0 reads per million, 121 experiments

cuuggaguggUGACAACUGGUAGCAGAGCAAugucaucuccacuugccgguuguuccugguaugucgagggauacuggugcugacAUUGCUCUGAUACCAAUUGUCGGCacucuaggc
(((((((((.((((((.(((((.(((((((((((((.(.......((((((.((((((.(.....).))))))))))))).))))))))))))).))))).)))))).))))))))).

Structure

-         g      C     G             u uccacuu      u      g u 
 cuuggagug UGACAA UGGUA CAGAGCAAuguca c       gccggu guuccu g a
 ||||||||| |||||| ||||| ||||||||||||| |       |||||| |||||| | u
 ggaucucaC GCUGUU ACCAU GUCUCGUUAcagu g       ugguca uaggga c g
c         G      A     A             c -------      -      g u 

Annotation confidence Medium

Genome context

3: 22088075-22088192 [-]

Mature osa-miR5485-5p

• Accession: MIMAT0022118
• Description: Oryza sativa osa-miR5485-5p mature miRNA
• Sequence: 11 - UGACAACUGGUAGCAGAGCAA - 31
• Evidence: experimental ; Illumina [1-2]

Mature osa-miR5485-3p

• Accession: MIMAT0056201
• Description: Oryza sativa osa-miR5485-3p mature miRNA
• Sequence: 86 - AUUGCUCUGAUACCAAUUGUCGGC - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207