Stem-loop osa-MIR5486

Accession

MI0019004

Description

Oryza sativa osa-MIR5486 precursor miRNA

Literature search

4 open access papers mention osa-MIR5486
(5 sentences)

Sequence

2402 reads, 18.0 reads per million, 54 experiments

uugcguugaaAGGGGCUUGCAUAUUCUACCAcccgcuugagcagugucgcaucaaCCUAGGAUUUGCUGGGCCUcgcuccaccgcug
..(((.((...((((((((((.((((((......(.((((((......)).)))).))))))).))).)))))))....)).)))..

Structure

uu   u  -aaA       -   U      CCAccc c    -  ag 
  gcg ug    GGGGCUU GCA AUUCUA      g uuga gc  u
  ||| ||    ||||||| ||| ||||||      | |||| ||   
  cgc ac    cUCCGGG CGU UAGGAU      C aacu cg  g
gu   c  cucg       U   U      ------ C    a  cu 

Annotation confidence Low

Genome context

3: 26838891-26838977 [+]

Mature osa-miR5486-5p

• Accession: MIMAT0022119
• Description: Oryza sativa osa-miR5486-5p mature miRNA
• Sequence: 11 - AGGGGCUUGCAUAUUCUACCA - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5486-3p

• Accession: MIMAT0056202
• Description: Oryza sativa osa-miR5486-3p mature miRNA
• Sequence: 56 - CCUAGGAUUUGCUGGGCCU - 74
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53