Stem-loop osa-MIR5487

Accession

MI0019005

Description

Oryza sativa osa-MIR5487 precursor miRNA

Literature search

2 open access papers mention osa-MIR5487
(3 sentences)

Sequence

agaacagcuaAAAGAUGUGCAUGUAGUUCCGgcuuaauuaagcgaguuugguguuaugacaagcugguuggaguacucguauuugaugaacauccucauuuuaaaauuuuaaugauuggaagagugaaauauugaguagauggcaucauggcuaugcauaugcucucuucccauacuuaaaauuaauggccuguauugcaugucacacuaccgcuguugg
..((((((....((.((((((((((((.(.((((......(((.((((((.........)))))).)))(((....((((.....))))...))).........((((((((..((.(((((((.(..((((...((..(((((......))))))))))).).))))))).))..))))))))...)))).).)))))))).))))))...))))))..

Structure

ag      uaAA  A    -        U C    uaauuaagcgaguuugguguuaugacaagcugguuggaguacucguauuugaugaacauccucauuuuaa        ug  u       u aa    uga  ag     au 
  aacagc    AG UGUG CAUGUAGU C Ggcu                                                                      aauuuuaa  au ggaagag g  auau   gu  auggc  c
  ||||||    || |||| |||||||| | ||||                                                                      ||||||||  || ||||||| |  ||||   ||  |||||   
  uugucg    uc acac guacguua g ccgg                                                                      uuaaaauu  ua ccuucuc c  uaua   cg  uaucg  a
gg      -cca  -    u        u u    -------------------------------------------------------------------uaa        ca  c       u -g    ---  --     gu 

Annotation confidence Not enough data

Genome context

Chr4: 17569162-17569381 [+]

Mature osa-miR5487

• Accession: MIMAT0022120
• Description: Oryza sativa osa-miR5487 mature miRNA
• Sequence: 11 - AAAGAUGUGCAUGUAGUUCCG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53