Stem-loop osa-MIR5488

Accession

MI0019006

Description

Oryza sativa osa-MIR5488 precursor miRNA

Literature search

2 open access papers mention osa-MIR5488
(2 sentences)

Sequence

acgcauuugaUGAAGGCGACUGAUGAUUUCAggagacacaagaugaccuugcgcguggugauuggauuuuuacugucauuuucucgcagaaggcacagauuggaucauuacucugaacagcaucacaagcuugcaagaaacacaauccuuuuaaauaaacaaauuuuuuaucuguggaaucagauuaaccauuagauguuuucacagaaguac
..((.((((.((((((((.((((((...((..((..((((.(((((.((((((.(((((((((.(((.....((((..((((((...)))))).))))))).))))))))).......(((.......)))))))))...............((((......)))).)))))))))...)).)).....)))))).)))))))))))).))..

Structure

ac  a    a        A      --AUU  Ag  -ga    a     -----------------------------c      -------------------c         g   uuuua    ca      c 
  gc uuug UGAAGGCG CUGAUG     UC  ga   caca gauga                              cuugcg                    guggugauu gau     cugu  uuuucu  
  || |||| |||||||| ||||||     ||  ||   |||| |||||                              ||||||                    ||||||||| |||     ||||  |||||| g
  ug agac acuuuugu gauuac     ag  cu   gugu cuauu                              gaacgu                    cauuacuag uua     gaca  ggaaga  
ca  a    -        a      caauu  -a  aag    -     uuuuaaacaaauaaauuuuccuaacacaaa      ucgaacacuacgacaagucu         g   -----    -c      c 

Annotation confidence Not enough data

Genome context

Chr12: 18039131-18039343 [+]

Mature osa-miR5488

• Accession: MIMAT0022121
• Description: Oryza sativa osa-miR5488 mature miRNA
• Sequence: 11 - UGAAGGCGACUGAUGAUUUCA - 31
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207