Stem-loop osa-MIR5488

Accession

MI0019006

Description

Oryza sativa osa-MIR5488 precursor miRNA

Literature search

2 open access papers mention osa-MIR5488
(2 sentences)

Sequence

1000 reads, 13.0 reads per million, 33 experiments

acgcauuugaUGAAGGCGACUGAUGAUUUCAggagacacaagaugaccuugcgcguggugauuggauuuuuacugucauuuucucgcagaaggcacagauuggaucauuacucugaacagcaucacaagcuugcaagaaacacaauccuuuuAAAUAAACAAAUUUUUUAucuguggaaucagauuaaccauuagauguuuucacagaaguac
..((.((((.((((((((.((((((...((..((..((((.(((((.((((((.(((((((((.(((.....((((..((((((...)))))).))))))).))))))))).......(((.......)))))))))...............((((......)))).)))))))))...)).)).....)))))).)))))))))))).))..

Structure

ac  a    a        A      --AUU  Ag  -ga    a     ccuugcgcguggugauuggauuuuuacugucauuuucucgcagaaggcacagauuggaucauuacucugaacagcaucacaagcuugcaagaaacacaauccuuuu    AA 
  gc uuug UGAAGGCG CUGAUG     UC  ga   caca gauga                                                                                                          AAAU  A
  || |||| |||||||| ||||||     ||  ||   |||| |||||                                                                                                          ||||   
  ug agac acuuuugu gauuac     ag  cu   gugu cuAUU                                                                                                          UUUA  C
ca  a    -        a      caauu  -a  aag    -     ---------------------------------------------------------------------------------------------------------U    AA 

Annotation confidence Not enough data

Genome context

12: 18039131-18039343 [+]

Mature osa-miR5488-5p

• Accession: MIMAT0022121
• Description: Oryza sativa osa-miR5488-5p mature miRNA
• Sequence: 11 - UGAAGGCGACUGAUGAUUUCA - 31
• Evidence: experimental ; Illumina [1-2]

Mature osa-miR5488-3p

• Accession: MIMAT0056204
• Description: Oryza sativa osa-miR5488-3p mature miRNA
• Sequence: 153 - AAAUAAACAAAUUUUUUA - 170
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207