Stem-loop osa-MIR5489

Accession

MI0019007

Description

Oryza sativa osa-MIR5489 precursor miRNA

Sequence

1044 reads, 10.0 reads per million, 48 experiments

CCACCCUUGCUUGGAUGCcauugaaacacugcuagcuaaaacauaacuucguccacaaauucaucguugcccuaagaguuugcagacuuguagucauagacucuggugugcaaacuacagagaauacaugaagaauauuuccugaauguccuuucuauuaccuaucugucucaagcaauaggcuuuggagguuucaggaaaccacugcaucugagcuagagagaucaaagaguaaucuggauuuccuugccugCAGGUGUUCUCGAUGGCUUCCuugccuagug
.(((....((..(((.(((((((((((((.............................((((.((((....((..(((((((((.(((.(.((((...))))).))).)))))))).)..)).....)))).)))).(((((((((...((..((((...(((((.(((.....))))))))...)))))).)))))))))...(((((...(.((.((.((((((..(((....))).)))))))).))))))))))))).)))))))).)))..))...)))

Structure

C   CCUU  UU   U        -     ugcuagcuaaaacauaacuucguccacaaauucaucguugcccuaagaguuugcagacuuguagucauagacucuggugugcaaacuacagagaauacaugaagaauauuuccugaauguccuuucuauuaccuaucugucucaagcaauaggcuuuggagguuucaggaaacca     ucu a  u  a      aa   g 
 CAC    GC  GGA GCcauuga aacac                                                                                                                                                                               cugca   g gc ag gagauc  aga u
 |||    ||  ||| |||||||| |||||                                                                                                                                                                               |||||   | || || ||||||  |||  
 gug    cg  CCU CGGUAGCU UUGUG                                                                                                                                                                               GACgu   c cg uc cuuuag  ucu a
-   -auc  uu   U        C     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     --- -  u  -      -g   a 

Annotation confidence Medium

Genome context

11: 23057493-23057776 [-]

Mature osa-miR5489-5p

• Accession: MIMAT0056205
• Description: Oryza sativa osa-miR5489-5p mature miRNA
• Sequence: 1 - CCACCCUUGCUUGGAUGC - 18
• Evidence: experimental ; unknown

Mature osa-miR5489-3p

• Accession: MIMAT0022122
• Description: Oryza sativa osa-miR5489-3p mature miRNA
• Sequence: 254 - CAGGUGUUCUCGAUGGCUUCC - 274
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53