Stem-loop osa-MIR5490

Accession

MI0019008

Description

Oryza sativa osa-MIR5490 precursor miRNA

Literature search

1 open access papers mention osa-MIR5490
(2 sentences)

Sequence

18346 reads, 63.0 reads per million, 140 experiments

gcuacuccaugucCUAAAGAAACCUCAUUCAGAagguguaccuggaugacauguauauacagguacauccuuaagaUUGGAUUUUUAUUUAGGACGGagggaguagg
.(((((((.(((((((((((((..(((.((..((((((((((((...............)))))))).))))..)).)))..)))).)))))))))...))))))).

Structure

g       --a         -    CC   U  AG    -        gaugac 
 cuacucc   ugucCUAAA GAAA  UCA UC  Aagg uguaccug      a
 |||||||   ||||||||| ||||  ||| ||  |||| ||||||||      u
 gaugagg   GCAGGAUUU UUUU  GGU ag  uucc acauggac      g
g       gaG         A    UA   U  aa    u        auauau 

Annotation confidence Medium

Genome context

11: 25091558-25091664 [-]

Mature osa-miR5490-5p

• Accession: MIMAT0056206
• Description: Oryza sativa osa-miR5490-5p mature miRNA
• Sequence: 14 - CUAAAGAAACCUCAUUCAGA - 33
• Evidence: experimental ; unknown

Mature osa-miR5490-3p

• Accession: MIMAT0022123
• Description: Oryza sativa osa-miR5490-3p mature miRNA
• Sequence: 77 - UUGGAUUUUUAUUUAGGACGG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53