Stem-loop osa-MIR5491

Accession

MI0019009

Description

Oryza sativa osa-MIR5491 precursor miRNA

Literature search

1 open access papers mention osa-MIR5491
(2 sentences)

Sequence

701 reads, 7.0 reads per million, 40 experiments

accaugcggcauugacaaucugagugcuucauuuuauacacguaUACUUUCACAGACAUAAGAGCacguuguguaucaaaaaauugUGAAAUGGAGGCUCGUUGUACguuguguacc
...(((((((....(((((..((((.((((((((((((............(((((.(..........))))))...........)))))))))))))))))))))..)))))))...

Structure

acc       auug     cu    g            cacguaUACUUU     A AUAA 
   augcggc    acaau  gagu cuucauuuuaua            CACAG C    G
   |||||||    |||||  |||| ||||||||||||            ||||| |     
   uguguug    UGUUG  CUCG GAGGUAAAGUgu            guguu g    A
cca       --CA     --    -            -uaaaaaacuau     - caCG 

Annotation confidence Low

Genome context

9: 6896342-6896458 [+]

Mature osa-miR5491-5p

• Accession: MIMAT0056207
• Description: Oryza sativa osa-miR5491-5p mature miRNA
• Sequence: 45 - UACUUUCACAGACAUAAGAGC - 65
• Evidence: experimental ; unknown

Mature osa-miR5491-3p

• Accession: MIMAT0022124
• Description: Oryza sativa osa-miR5491-3p mature miRNA
• Sequence: 87 - UGAAAUGGAGGCUCGUUGUAC - 107
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207