Stem-loop osa-MIR5492

Accession

MI0019010

Description

Oryza sativa osa-MIR5492 precursor miRNA

Literature search

1 open access papers mention osa-MIR5492
(4 sentences)

Sequence

134 reads, 2.0 reads per million, 35 experiments

acaaugagggAGAAGGAGAAUAGAUAUGGUUgaguuaauuauagaaaucauucuggugauuggauuuaaucagugucuucuugggaagugcaacuaauaaaaguuacaCUUUUUUUUCUAAUAAUUGugguuuuagacucaauaacuguuguuucuccucucacccuauucau
......((((.(((((((((..((((..(((((((((((((((((((.......(.((((((....)))))).)........((((((((.((((......)))).))))))))))))).)))))).........))))))))...))))..))))))).)).))))......

Structure

acaaug    A  -       UA    -UG        ---------      -     ucauucuggugauuggauuuaaucagugucuucuu        c    aa 
      aggg GA AGGAGAA  GAUA   GUUgaguu         aauuau agaaa                                   gggaagug aacu  u
      |||| || |||||||  ||||   ||||||||         |||||| |||||                                   |||||||| ||||   
      uccc cu uccucuu  uugu   uaacucag         UUAAUA UCUUU                                   UUUUUCac uuga  a
uacuua    a  c       ug    caa        auuuugguG      A     -----------------------------------        a    aa 

Annotation confidence Not enough data

Genome context

6: 16973816-16973988 [+]

Mature osa-miR5492-5p

• Accession: MIMAT0022125
• Description: Oryza sativa osa-miR5492-5p mature miRNA
• Sequence: 11 - AGAAGGAGAAUAGAUAUGGUU - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5492-3p

• Accession: MIMAT0056208
• Description: Oryza sativa osa-miR5492-3p mature miRNA
• Sequence: 109 - CUUUUUUUUCUAAUAAUUG - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53