Stem-loop osa-MIR5494

Accession

MI0019012

Description

Oryza sativa osa-MIR5494 precursor miRNA

Sequence

auuuguuucuUUAUAGGAGGUAUAGACGGUAgccacgucacuuucuuuuugccuaaucccaugcacgagaacugaagccccucucuguaucuugauaugacaucgcauagaaacaaga
..(((((((((((((.((((((((((.((..((....(((..(((((..(((..........))).))))).))).))..)).))))))))))..)))))........))))))))..

Structure

au        --------     -G          C  UA  cacg   cu     uu   cuaa 
  uuguuucu        UUAUA  GAGGUAUAGA GG  gc    uca  uucuu  ugc    u
  ||||||||        |||||  |||||||||| ||  ||    |||  |||||  |||     
  aacaaaga        aguau  uucuaugucu uc  cg    agu  aagag  acg    c
ag        uacgcuac     ag          c  cc  ---a   -c     -c   uacc 

Annotation confidence Not enough data

Genome context

Chr1: 2317278-2317395 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5494

Mature osa-miR5494

• Accession: MIMAT0022127
• Description: Oryza sativa osa-miR5494 mature miRNA
• Sequence: 11 - UUAUAGGAGGUAUAGACGGUA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53