Stem-loop osa-MIR5495

Accession

MI0019013

Description

Oryza sativa osa-MIR5495 precursor miRNA

Literature search

1 open access papers mention osa-MIR5495
(2 sentences)

Sequence

acauaacccgAGAGGUCCGGAUCGAACGUAGgaauagucaagaaaauggcaaacaaacguaccgcguauugucucuuacagccuuauagcacauucugcacucuugucucaugggcugugcacauuguuuugauacccauggagaucauugugaccucguuggccugcgcaagccauuucacuaucuucuucucccagggugcuaugugaauuaauuucuugaacucuuagacuuugcuuugauccuggccuuucuugaaaugg
.(((.....((((((((.((((((((.(((((((.((((((((((..(((((....((((...)))).)))))...((((((((...((.(((...........)))))...))))))))(((((.((......((((..(((((.....((((......((((........))))..))))........)))))..)))))).)))))......))))))).))).))....))))))))))))).)))))))).....))).

Structure

a   aaccc        C        C     ----  u   -       auggcaaacaaacguaccgcguauugucucuuacagccuuauagcacauucugcacucuugucucaugggcugug     u  uuugau    au     ---ucauu    ccucgu    cug 
 cau     gAGAGGUC GGAUCGAA GUAGg    aa agu caagaaa                                                                           cacau gu      accc  ggaga        guga      uggc   c
 |||     |||||||| |||||||| |||||    || ||| |||||||                                                                           ||||| ||      ||||  |||||        ||||      ||||    
 gua     cuuuccgg ccuaguuu cguuu    uu uca guucuuu                                                                           gugua cg      uggg  ccucu        cacu      accg   g
g   aaguu        u        -     caga  c   a       ---------------------------------------------------------------------aauuaa     u  ------    ac     ucuucuau    ----uu    aac 

Annotation confidence Not enough data

Genome context

Chr2: 20298332-20298595 [+]

Mature osa-miR5495

• Accession: MIMAT0022128
• Description: Oryza sativa osa-miR5495 mature miRNA
• Sequence: 11 - AGAGGUCCGGAUCGAACGUAG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53