Stem-loop osa-MIR5497

Accession

MI0019015

Description

Oryza sativa osa-MIR5497 precursor miRNA

Literature search

3 open access papers mention osa-MIR5497
(6 sentences)

Sequence

18629 reads, 184.0 reads per million, 45 experiments

aauuguugccCAGAAUAUCUGGGACGAGCAUgauaacaugugcacaguauagcucggacuuguuaaucuccuaAUGUUGGCUCUCCCAAUGCcuuccauucucacacacucuucuauauguuuucuuggguagauagc
.....((((((((((....(((((.((((....((((((..(...((..((((........))))..)).)..)))))))))))))))(((.....))).......................))).))))))).....

Structure

aauug       -   ------------------------------UAUC     C    AUga      gu cac  ua    ucg 
     uugccCA GAA                                  UGGGA GAGC    uaacau  g   ag  uagc   g
     ||||||| |||                                  ||||| ||||    ||||||  |   ||  ||||    
     gaugggu cuu                                  ACCCU CUCG    GUUGUA  c   uc  auug   a
cgaua       u   uuguauaucuucucacacacucuuaccuucCGUA     -    ----      au --c  ua    uuc 

Annotation confidence Medium

Genome context

3: 32506012-32506149 [+]

Mature osa-miR5497-5p

• Accession: MIMAT0022130
• Description: Oryza sativa osa-miR5497-5p mature miRNA
• Sequence: 11 - CAGAAUAUCUGGGACGAGCAU - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5497-3p

• Accession: MIMAT0056211
• Description: Oryza sativa osa-miR5497-3p mature miRNA
• Sequence: 74 - AUGUUGGCUCUCCCAAUGC - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53