Stem-loop osa-MIR5499

Accession

MI0019017

Description

Oryza sativa osa-MIR5499 precursor miRNA

Literature search

1 open access papers mention osa-MIR5499
(1 sentences)

Sequence

439 reads, 4.0 reads per million, 45 experiments

uucugcuguuccauguucgauucuucauuuggggaucuaacaucagcgggaaCCUUAAGUCUUCUUCACAUAUccauuugauggauagauugccGAAGGAAGAAUCGUUAUGGAAugaugcagau
.(((((.((((((((..(((((((((.(((((.((((((.((((((..(((.....(((....)))......)))..))))))..)))))).))))).))))))))).))))))))...))))).

Structure

u     --u        uu         a     g      -a      cg   -aCCUU   U 
 ucugc   guuccaug  cgauucuuc uuugg gaucua  caucag  gga      AAG C
 |||||   ||||||||  ||||||||| ||||| ||||||  ||||||  |||      |||  
 agacg   uAAGGUAU  GCUAAGAAG AAGcc uuagau  guaguu  ccU      UUC U
u     uag        -U         G     g      ag      ua   AUACAC   U 

Annotation confidence Low

Genome context

4: 17241717-17241841 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5499

Mature osa-miR5499-5p

• Accession: MIMAT0056213
• Description: Oryza sativa osa-miR5499-5p mature miRNA
• Sequence: 53 - CCUUAAGUCUUCUUCACAUAU - 73
• Evidence: experimental ; unknown

Mature osa-miR5499-3p

• Accession: MIMAT0022132
• Description: Oryza sativa osa-miR5499-3p mature miRNA
• Sequence: 95 - GAAGGAAGAAUCGUUAUGGAA - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53