Stem-loop osa-MIR5501

Accession

MI0019019

Description

Oryza sativa osa-MIR5501 precursor miRNA

Sequence

aucuuugccgauuauuccuucugcaccacaaggaugccaugagguucccuuccuucuguagacagauauggugcaagguggaacuuuccacaugauagggaaggcaccgugagguagggaauggugugccuuccuucgugcaagagggaaaagagggaugucagagccagcauagaugauugcagcggaccagggugauuggagcaggcuccuccccuuguuuggugccgguugguugugccugcuauggcuuucccugccagcaucaagccaucaacugugaugggggugcgcaagggagggaugcacauuugggauaagcaaagauguugaucUCUUGUGGCUAGAAGGGUGAGgggcaaaaua
...((((((..((((.(((((((..(((((((((((((....)))(((((((((((((....))))((((((((...(((((....)))))............)))))))).(((((((((....((.(((((((((......))))))....))).))((((.(((..((((((.((((((((.(((((.((((.((..((((....)))))))))).))))).)).)))))).))))))..))).)))).))))))))).(((((...((((((....)))))).)))))...))))))))).(((..((((.......))))..)))..))).))))))).)))))))))))..))))))...

Structure

auc      ga    u       ca       -   ------------------gccaugaggu         ucuguagacagauauggugcaagguggaacuuuccacaugauagggaaggcaccguga         uggugugccuuccuucgugcaagagggaaaagagggau    g   ca      a      -  g     c    u  uu    c 
   uuugcc  uuau ccuucug  ccacaag gau                            ucccuuccu                                                          gguagggaa                                      guca agc  gcauag ugauug ca cggac aggg ga  ggag a
   ||||||  |||| |||||||  ||||||| |||                            |||||||||                                                          |||||||||                                      |||| |||  |||||| |||||| || ||||| |||| ||  ||||  
   aaacgg  AGUG GGAAGAU  GGUGUUC cua                            agggaggga                                                          ccgucccuu                                      cggu ucg  cguguu guuggc gu guuug uccc cu  ccuc g
aua      gG    -       -C       U   guuguagaaacgaauaggguuuacacgu         ------------------------acgcguggggguagugucaacuaccgaacuacga         -------------------------------------u    a   uc      g      c  g     u    -  --    g 

Annotation confidence Not enough data

Genome context

Chr4: 28837880-28838245 [+]

Mature osa-miR5501

• Accession: MIMAT0022134
• Description: Oryza sativa osa-miR5501 mature miRNA
• Sequence: 336 - UCUUGUGGCUAGAAGGGUGAG - 356
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53