Stem-loop osa-MIR5504

Accession

MI0019022

Description

Oryza sativa osa-MIR5504 precursor miRNA

Literature search

3 open access papers mention osa-MIR5504
(8 sentences)

Sequence

28123 reads, 133.0 reads per million, 141 experiments

auugcugaauuuuguucguuggAGCUUGUUCUGUUAUUUUauuugcacugccguaggaaauacacAGUGACGGGAGGACUGCAAGGuucuucagcuuu
...((((((....(..(.(((.((.((.((((((((((.(((((.(((....)).).)))))...)))))))))).)))).))).)..)))))))...

Structure

auu      uuuu uu g   g  C  G          --U     g -  u 
   gcugaa    g  c uug AG UU UUCUGUUAUU   Uauuu c ac g
   ||||||    |  | ||| || || ||||||||||   ||||| | ||  
   cgacuu    c  G AAC UC AG AGGGCAGUGA   auaaa g ug c
uuu      ---- uu G   G  -  G          cac     g a  c 

Annotation confidence Medium

Genome context

10: 17228165-17228262 [-]

Mature osa-miR5504-5p

• Accession: MIMAT0056217
• Description: Oryza sativa osa-miR5504-5p mature miRNA
• Sequence: 23 - AGCUUGUUCUGUUAUUUU - 40
• Evidence: experimental ; unknown

Mature osa-miR5504-3p

• Accession: MIMAT0022137
• Description: Oryza sativa osa-miR5504-3p mature miRNA
• Sequence: 66 - AGUGACGGGAGGACUGCAAGG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53