Stem-loop osa-MIR5504

Accession

MI0019022

Description

Oryza sativa osa-MIR5504 precursor miRNA

Literature search

3 open access papers mention osa-MIR5504
(8 sentences)

Sequence

8 reads, 8 reads per million, 2 experiments

auugcugaauuuuguucguuggagcuuguucuguuauuuuauuugcacugccguaggaaauacacAGUGACGGGAGGACUGCAAGGuucuucagcuuu
...((((((....(..(.(((.((.((.((((((((((.(((((.(((....)).).)))))...)))))))))).)))).))).)..)))))))...

Structure

auu      uuuu uu g   g  c  g          --u     g -  u 
   gcugaa    g  c uug ag uu uucuguuauu   uauuu c ac g
   ||||||    |  | ||| || || ||||||||||   ||||| | ||  
   cgacuu    c  G AAC UC AG AGGGCAGUGA   auaaa g ug c
uuu      ---- uu G   G  -  G          cac     g a  c 

Annotation confidence Not enough data

Genome context

Chr10: 17228165-17228262 [-]

Mature osa-miR5504

• Accession: MIMAT0022137
• Description: Oryza sativa osa-miR5504 mature miRNA
• Sequence: 66 - AGUGACGGGAGGACUGCAAGG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53