Stem-loop osa-MIR5505

Accession

MI0019023

Description

Oryza sativa osa-MIR5505 precursor miRNA

Literature search

2 open access papers mention osa-MIR5505
(2 sentences)

Sequence

2 reads, 1 reads per million, 1 experiments

cauuggcacuauggcgcauguauguugaguucuugaagcauugccgauaucgauauauauuucuuugcaugggacaguagccuuuucugcggcggaucguuuccuuuucuccaaucauaaauaaccugaucucuuucuuugucuuucaucaaauaaguacaagaauugcauagauGAGGAUUCGGUAUUGAUCGCUAaaaugcgagaa
...(.(((...(((((.(((((((((((..((.............))..)))))))))))((((......)))).....(((........)))(((.....)))...................(((.((((.((((((.(((..(((...............)))..))).))).))))))).)))......)))))...))).)...

Structure

cau g   cua     cauguauguugaguucuugaagcauugccgauaucgauauauauuucuuugcaugggacaguagccuuuucugcggcggaucguuuccuuuucuccaaucauaaaua   u    u   -   u   cu   aucaaa 
   u gca   uggcg                                                                                                           acc gauc cuu ucu ugu  uuc      u
   | |||   |||||                                                                                                           ||| |||| ||| ||| |||  |||      a
   a cgu   AUCGC                                                                                                           UGG UUAG GAG aga acg  aag      a
aag g   aaa     -----------------------------------------------------------------------------------------------------UAGUUA   C    -   u   u   uu   aacaug 

Annotation confidence Not enough data

Genome context

Chr12: 13389006-13389213 [+]

Mature osa-miR5505

• Accession: MIMAT0022138
• Description: Oryza sativa osa-miR5505 mature miRNA
• Sequence: 176 - GAGGAUUCGGUAUUGAUCGCUA - 197
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53