Stem-loop osa-MIR5505

Accession

MI0019023

Description

Oryza sativa osa-MIR5505 precursor miRNA

Literature search

2 open access papers mention osa-MIR5505
(2 sentences)

Sequence

2945 reads, 15.0 reads per million, 121 experiments

cauuggcacuauggcgcauguauguugaguucuugaagcauugccgauaucgauauauauuucuuugcaUGGGACAGUAGCCUUUUCUGCggcggaucguuuccuuuucuccaaucauaaauaaccugaucucuuucuuugucuuucaucaaauaaguacaagaauugcauagauGAGGAUUCGGUAUUGAUCGCUAaaaugcgagaa
...(.(((...(((((.(((((((((((..((.............))..)))))))))))((((......)))).....(((........)))(((.....)))...................(((.((((.((((((.(((..(((...............)))..))).))).))))))).)))......)))))...))).)...

Structure

cau g   cua     ------------------------------------cauguauguugaguucuugaagcauugccgauaucgauauauauuucuuugcaUGGGACAGUA   UUU 
   u gca   uggcg                                                                                                   GCC   U
   | |||   |||||                                                                                                   |||    
   a cgu   AUCGC                                                                                                   cgg   C
aag g   aaa     UAGUUAUGGCUUAGGAGuagauacguuaagaacaugaauaaacuacuuucuguuucuuucucuaguccaauaaauacuaaccucuuuuccuuugcuagg   CGU 

Annotation confidence Low

Genome context

12: 13389006-13389213 [+]

Mature osa-miR5505-5p

• Accession: MIMAT0056218
• Description: Oryza sativa osa-miR5505-5p mature miRNA
• Sequence: 70 - UGGGACAGUAGCCUUUUCUGC - 90
• Evidence: experimental ; unknown

Mature osa-miR5505-3p

• Accession: MIMAT0022138
• Description: Oryza sativa osa-miR5505-3p mature miRNA
• Sequence: 176 - GAGGAUUCGGUAUUGAUCGCUA - 197
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53