Stem-loop osa-MIR5506

Accession

MI0019024

Description

Oryza sativa osa-MIR5506 precursor miRNA

Literature search

2 open access papers mention osa-MIR5506
(2 sentences)

Sequence

592 reads, 9.0 reads per million, 34 experiments

accaguuguaUGGAUCGCUUCGUCUGAUGGUccuccuauugacucaaguggacgugacugaacccuaggagugcucagcccaUCAAGGUGACGUCGAUGCAGAUGacauug
....(((((.((.(((((.(((((((((((.(((((((.....(((.((.......)))))....))))))......).))))).)))))).).)))).)).)))))....

Structure

acca     a  G    - U      -     U ------      uugac   a  gg 
    guugu UG AUCG C UCGUCU GAUGG c      cuccua     uca gu  a
    ||||| || |||| | |||||| ||||| |      ||||||     ||| ||  c
    caGUA AC UAGC G AGUGGA CUacc g      gaggau     agu ca  g
guua     G  G    U C      A     c acucgu      -ccca   -  gu 

Annotation confidence High

Genome context

12: 15164737-15164847 [-]

Mature osa-miR5506-5p

• Accession: MIMAT0022139
• Description: Oryza sativa osa-miR5506-5p mature miRNA
• Sequence: 11 - UGGAUCGCUUCGUCUGAUGGU - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5506-3p

• Accession: MIMAT0056219
• Description: Oryza sativa osa-miR5506-3p mature miRNA
• Sequence: 83 - UCAAGGUGACGUCGAUGCAGAUG - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53