Stem-loop osa-MIR5507

Accession

MI0019025

Description

Oryza sativa osa-MIR5507 precursor miRNA

Sequence

aaagcauauauuggguugucgguuuucauaaaaaaacagucugguucagccaguucuagcaggucuaauugcauggacucucuaugaggaaauacgauccugugagggugcugguuagcugcaccaaugugauggaggccccagcugcauagcgcgcgacucacgccagcagcgagcgcacucuggaccauacaucagauuccaccacgauggcAAUGAGAAUGAUGACCCGGUGaaaugacaac
....(((.(((((((((((((.(((((((........((.(((((...)))))..)).((((..(((((..((.(.((((((....((((.......))))..)))))).)))))))))))).(((.((((.(((((((.(..(((((...(((.(.....).)))..)))))..).))..(((((........)))))))))).)))).)))..))))))))))))))))))))..))).....

Structure

-aaag   -a             g       ----------------------------------------------------------------aaaaaaacagucugguucagccaguucua    gu     ug  u g      uaug    aa 
     cau  uauuggguugucg uuuucau                                                                                             gcag  cuaau  ca g acucuc    agga  u
     |||  ||||||||||||| |||||||                                                                                             ||||  |||||  || | ||||||    ||||  a
     gua  GUGGCCCAGUAGU AAGAGUA                                                                                             cguc  gauug  gu c ugggag    uccu  c
caaca   aa             -       Acgguagcaccaccuuagacuacauaccaggucucacgcgagcgacgaccgcacucagcgcgcgauacgucgaccccggagguaguguaacca    --     --  - g      --ug    ag 

Annotation confidence Not enough data

Genome context

Chr12: 21019878-21020122 [-]

Mature osa-miR5507

• Accession: MIMAT0022140
• Description: Oryza sativa osa-miR5507 mature miRNA
• Sequence: 215 - AAUGAGAAUGAUGACCCGGUG - 235
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53