Stem-loop osa-MIR5508

Accession

MI0019026

Description

Oryza sativa osa-MIR5508 precursor miRNA

Literature search

2 open access papers mention osa-MIR5508
(4 sentences)

Sequence

16335 reads, 52.0 reads per million, 141 experiments

gcuauugaacUAGAUGGCUGAUCUGGUGUGGcuuggcuuuggguaagaaggauuggccucugucuagugccucacuuuccuucugcgguucugucuacuguccugguuuggaagaagUCAAACCAAGCCAGAUCAGCCAUCuaguugagucuc
...(((.((((((((((((((((((((.(((.((((((((.....(((((((..(((((......)).)))......)))))))(((((.......)))))((......))..)))))))).))).)))))))))))))))))))).)))...

Structure

gcu   g                    G   c        ------------------------gggua       ----uu   -  cu 
   auu aacUAGAUGGCUGAUCUGGU UGG uuggcuuu                             agaagga      ggc cu  g
   ||| |||||||||||||||||||| ||| ||||||||                             |||||||      ||| ||   
   uga uugauCUACCGACUAGACCG ACC AACUgaag                             ucuuccu      ccg ga  u
cuc   g                    A   A        aagguuugguccugucaucugucuuggcg       uucacu   u  uc 

Annotation confidence Low

Genome context

6: 638203-638355 [-]

Mature osa-miR5508-5p

• Accession: MIMAT0022141
• Description: Oryza sativa osa-miR5508-5p mature miRNA
• Sequence: 11 - UAGAUGGCUGAUCUGGUGUGG - 31
• Evidence: experimental ; Illumina [1-2]

Mature osa-miR5508-3p

• Accession: MIMAT0056221
• Description: Oryza sativa osa-miR5508-3p mature miRNA
• Sequence: 118 - UCAAACCAAGCCAGAUCAGCCAUC - 141
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207