Accession
MI0019027
Description
Oryza sativa
osa-MIR5509 precursor miRNA
Literature search
1 open access papers mention osa-MIR5509
(2 sentences)
(2 sentences)
Sequence
5671
reads,
53.0
reads per million, 53 experiments
uuuccaagccUAGGCAUUUUCUCUUGGCAUGcugugcagcuuauuccaggaaacauuauauugaacuuuaguagaggaauugcauauuaaaguuuuucuugaaguaagucaaguaaauauuuuuggugacaggcuacauuugggauagcagggauaccgucuagugccuaaugcgugcCUUUGGAUUCGAAAUGGUCAGgccuaucgcccugugauuguuauuucuuuguuggguu
.......((((.(((..(((((((.(((((((.(((.(((((...(((((((...((((.((((((((((..(((((((((.........)))))))))))))))...))))))))...)))))))....))))).)))(((((.(((..((....))..)))...))))).)))))))...)))...))))..))))))).....((((...((........))......)))).
.......((((.(((..(((((((.(((((((.(((.(((((...(((((((...((((.((((((((((..(((((((((.........)))))))))))))))...))))))))...)))))))....))))).)))(((((.(((..((....))..)))...))))).)))))))...)))...))))..))))))).....((((...((........))......)))).
Structure
----------------------------uuuccaa A AU --- --U --------------------------------u c -auu aca a --- gu gca
gccU GGC UUUC UCU GGCAUGc gug agcuu ccaggaa uuau uuga acuuua agaggaauu u
|||| ||| |||| ||| ||||||| ||| ||||| ||||||| |||| |||| |||||| ||||||||| a
cgGA CUG AAAG AGG Ccgugcg uac ucgga gguuuuu aaug aacu ugaagu ucuuuuuga u
uuggguuguuucuuuauuguuagugucccgcuauc - GU CUU UUU uaauccgugaucugccauagggacgauaggguu a cagu aua - gaa -- aau
Annotation confidence
High
Do you think this miRNA is real?
Genome context
11: 24258580-24258815 [-]
Database links
Mature osa-miR5509-5p
| Accession | MIMAT0022142 |
| Description | Oryza sativa osa-miR5509-5p mature miRNA |
| Sequence | 11 - UAGGCAUUUUCUCUUGGCAUG - 31 |
| Evidence |
experimental
Illumina [1] |
Mature osa-miR5509-3p
| Accession | MIMAT0056222 |
| Description | Oryza sativa osa-miR5509-3p mature miRNA |
| Sequence | 179 - CUUUGGAUUCGAAAUGGUCAG - 199 |
| Evidence |
experimental
unknown |
References
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