Stem-loop osa-MIR5509

Accession

MI0019027

Description

Oryza sativa osa-MIR5509 precursor miRNA

Literature search

1 open access papers mention osa-MIR5509
(2 sentences)

Sequence

uuuccaagccUAGGCAUUUUCUCUUGGCAUGcugugcagcuuauuccaggaaacauuauauugaacuuuaguagaggaauugcauauuaaaguuuuucuugaaguaagucaaguaaauauuuuuggugacaggcuacauuugggauagcagggauaccgucuagugccuaaugcgugccuuuggauucgaaauggucaggccuaucgcccugugauuguuauuucuuuguuggguu
.......((((.(((..(((((((.(((((((.(((.(((((...(((((((...((((.((((((((((..(((((((((.........)))))))))))))))...))))))))...)))))))....))))).)))(((((.(((..((....))..)))...))))).)))))))...)))...))))..))))))).....((((...((........))......)))).

Structure

----------------------------uuuccaa    A   AU    ---   --U       --------------------------------u   c     -auu       aca    a    ---      gu         gca 
                                   gccU GGC  UUUC   UCU   GGCAUGc                                 gug agcuu    ccaggaa   uuau uuga   acuuua  agaggaauu   u
                                   |||| |||  ||||   |||   |||||||                                 ||| |||||    |||||||   |||| ||||   ||||||  |||||||||   a
                                   cgga cug  aaag   agg   ccgugcg                                 uac ucgga    gguuuuu   aaug aacu   ugaagu  ucuuuuuga   u
uuggguuguuucuuuauuguuagugucccgcuauc    -   gu    cuu   uuu       uaauccgugaucugccauagggacgauaggguu   a     cagu       aua    -    gaa      --         aau 

Annotation confidence Not enough data

Genome context

Chr11: 24258580-24258815 [-]

Mature osa-miR5509

• Accession: MIMAT0022142
• Description: Oryza sativa osa-miR5509 mature miRNA
• Sequence: 11 - UAGGCAUUUUCUCUUGGCAUG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53