Stem-loop osa-MIR5510

Accession

MI0019028

Description

Oryza sativa osa-MIR5510 precursor miRNA

Sequence

10700 reads, 50.0 reads per million, 139 experiments

guuggcucaaAGGCUGAUCCACUCCAGAGGAgguuucguaggacagauccccucgauucauugucacucguucauggaucaucccgaugaacaucCUCAGGAGUGGAUUGGGCUUCaagacagca
((((.((..(((.((((((((((((.(((((.(((.(((.(((..(((((...(((...........))).....))))).)))..)))))).))))).)))))))))))).)))..)).)))).

Structure

-    g  ca   G            A     g   u   -a   ca     --ccu   uuca 
 guug cu  aAG CUGAUCCACUCC GAGGA guu cgu  gga  gaucc     cga    u
 |||| ||  ||| |||||||||||| ||||| ||| |||  |||  |||||     |||    u
 cgac ga  UUC GGUUAGGUGAGG CUCcu caa gua  ccu  cuagg     gcu    g
a    a  aC   G            A     a   -   gc   -a     uacuu   cacu 

Annotation confidence High

Genome context

12: 19127914-19128038 [-]

Mature osa-miR5510-5p

• Accession: MIMAT0022143
• Description: Oryza sativa osa-miR5510-5p mature miRNA
• Sequence: 11 - AGGCUGAUCCACUCCAGAGGA - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5510-3p

• Accession: MIMAT0056223
• Description: Oryza sativa osa-miR5510-3p mature miRNA
• Sequence: 96 - CUCAGGAGUGGAUUGGGCUUC - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53