Stem-loop osa-MIR5510

Accession

MI0019028

Description

Oryza sativa osa-MIR5510 precursor miRNA

Sequence

3 reads, 2 reads per million, 2 experiments

guuggcucaaAGGCUGAUCCACUCCAGAGGAgguuucguaggacagauccccucgauucauugucacucguucauggaucaucccgaugaacauccucaggaguggauugggcuucaagacagca
((((.((..(((.((((((((((((.(((((.(((.(((.(((..(((((...(((...........))).....))))).)))..)))))).))))).)))))))))))).)))..)).)))).

Structure

-    g  ca   G            A     g   u   -a   ca     --ccu   uuca 
 guug cu  aAG CUGAUCCACUCC GAGGA guu cgu  gga  gaucc     cga    u
 |||| ||  ||| |||||||||||| ||||| ||| |||  |||  |||||     |||    u
 cgac ga  uuc gguuaggugagg cuccu caa gua  ccu  cuagg     gcu    g
a    a  ac   g            a     a   -   gc   -a     uacuu   cacu 

Annotation confidence Not enough data

Genome context

Chr12: 19127914-19128038 [-]

Mature osa-miR5510

• Accession: MIMAT0022143
• Description: Oryza sativa osa-miR5510 mature miRNA
• Sequence: 11 - AGGCUGAUCCACUCCAGAGGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53