Stem-loop osa-MIR5511

Accession

MI0019029

Description

Oryza sativa osa-MIR5511 precursor miRNA

Literature search

1 open access papers mention osa-MIR5511
(1 sentences)

Sequence

258 reads, 5.0 reads per million, 27 experiments

uugguggaagaaggccaaguguuugggauguuggAAAUAACUUCCUAGCUGGCUGgccuaagaaauuuucauagacaaagagccguuucaaaccaugCAUAUCCCAGCUGUUUCGGCCuugcugcauu
...(((.(..(((((((((...(((((((((.((((.....))))....(((((...(((.(((...))).)))......))))).............)))))))))...))).))))))..).))).

Structure

uug   g ag      -   ugu         ----------------------------------------------------u    A 
   gug a  aaggcc aag   uugggaugu                                                     ggAA U
   ||| |  |||||| |||   |||||||||                                                     |||| A
   uac u  uuCCGG UUU   GACCCUAUA                                                     CCUU A
--u   g cg      C   GUC         CguaccaaacuuugccgagaaacagauacuuuuaaagaauccgGUCGGUCGAU    C 

Annotation confidence Low

Genome context

4: 14653011-14653138 [-]

Mature osa-miR5511-5p

• Accession: MIMAT0056224
• Description: Oryza sativa osa-miR5511-5p mature miRNA
• Sequence: 35 - AAAUAACUUCCUAGCUGGCUG - 55
• Evidence: experimental ; unknown

Mature osa-miR5511-3p

• Accession: MIMAT0022144
• Description: Oryza sativa osa-miR5511-3p mature miRNA
• Sequence: 98 - CAUAUCCCAGCUGUUUCGGCC - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53