Stem-loop osa-MIR5512a

Accession

MI0019030

Description

Oryza sativa osa-MIR5512a precursor miRNA

Literature search

1 open access papers mention osa-MIR5512a
(2 sentences)

Sequence

7395 reads, 31.0 reads per million, 138 experiments

cucuuguauuuuuuUUUAGCAUUACCAUAUCCUAUuuggcaaugaauuucauauacuagaguauguucuuaagauuggauugucuaaagugaaauucauugccaaaUAGGAUAUGGUAAUGCUAAAAaaauacauga
.((.((((((((((..((((((((((((((((((((((((((((((((((((....((((....((((........))))..))))..)))))))))))))))))))))))))))))))))))))))))))))).))

Structure

c  u          UU                                    auac    guau    uua 
 uc uguauuuuuu  UAGCAUUACCAUAUCCUAUuuggcaaugaauuucau    uaga    guuc   a
 || ||||||||||  ||||||||||||||||||||||||||||||||||||    ||||    ||||    
 ag acauaaaAAA  AUCGUAAUGGUAUAGGAUaaaccguuacuuaaagug    aucu    uagg   g
-  u          --                                    --aa    --gu    uua 

Annotation confidence Medium

Genome context

4: 18386976-18387112 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5512a

Mature osa-miR5512a-5p

• Accession: MIMAT0056225
• Description: Oryza sativa osa-miR5512a-5p mature miRNA
• Sequence: 15 - UUUAGCAUUACCAUAUCCUAU - 35
• Evidence: experimental ; unknown

Mature osa-miR5512a-3p

• Accession: MIMAT0022145
• Description: Oryza sativa osa-miR5512a-3p mature miRNA
• Sequence: 107 - UAGGAUAUGGUAAUGCUAAAA - 127
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53