Stem-loop osa-MIR5514

Accession

MI0019033

Description

Oryza sativa osa-MIR5514 precursor miRNA

Literature search

2 open access papers mention osa-MIR5514
(2 sentences)

Sequence

7333 reads, 31.0 reads per million, 101 experiments

uuggacagcuUCCCAGAGCUUUGGCCGUCGCuccggucuucugccaugacaucAAUCUUUGGACCGCCGGCGACUGGccuuguucugggaugaacuugaacaga
(((..((((.(((((((((...((((((((((.((((((.......((....))......))))))..)))))).))))..))))))))).)...)))..))).

Structure

-   ga   --- u         UUU    -      -c      ucugcca  a 
 uug  cag   c UCCCAGAGC   GGCC GUCGCu  cggucu       ug c
 |||  |||   | |||||||||   |||| ||||||  ||||||       ||  
 gac  guu   g agggucuug   ccGG CAGCGG  GCCAGG       Ac a
a   aa   caa u         -uu    U      CC      -UUUCUA  u 

Annotation confidence Medium

Genome context

2: 22840161-22840264 [+]

Mature osa-miR5514-5p

• Accession: MIMAT0022148
• Description: Oryza sativa osa-miR5514-5p mature miRNA
• Sequence: 11 - UCCCAGAGCUUUGGCCGUCGC - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5514-3p

• Accession: MIMAT0056228
• Description: Oryza sativa osa-miR5514-3p mature miRNA
• Sequence: 54 - AAUCUUUGGACCGCCGGCGACUGG - 77
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53