Stem-loop osa-MIR5515

Accession

MI0019034

Description

Oryza sativa osa-MIR5515 precursor miRNA

Sequence

698 reads, 6.0 reads per million, 60 experiments

aaauuguuugguucaguuggggagacgaucacgccuuAAUUGGAAUGAGAGACUUCGGGAGuuuuaguuauucuauuuggacacccaaaugggCCGAUGGUUGUUCUACAGGUGaaaacaaugu
..(((((((...(((.(((.((((.(((((((((((.....((((((((((((((...)))))))..)))))))((((((....))))))))).)).)))))))))).))).))))))))))..

Structure

aa       ggu   g   g    a      -  -   -----------uAAUU       --       C 
  auuguuu   uca uug ggag cgauca cg ccu                GGAAUGA  GAGACUU  
  |||||||   ||| ||| |||| |||||| || |||                |||||||  ||||||| G
  uaacaaa   aGU GAC UCUU GUUGGU GC ggg                ucuuauu  uuuuGAG  
ug       ---   G   A    -      A  C   uaaacccacagguuua       ga       G 

Annotation confidence Low

Genome context

4: 17244138-17244261 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5515

Mature osa-miR5515-5p

• Accession: MIMAT0056229
• Description: Oryza sativa osa-miR5515-5p mature miRNA
• Sequence: 38 - AAUUGGAAUGAGAGACUUCGGGAG - 61
• Evidence: experimental ; unknown

Mature osa-miR5515-3p

• Accession: MIMAT0022149
• Description: Oryza sativa osa-miR5515-3p mature miRNA
• Sequence: 94 - CCGAUGGUUGUUCUACAGGUG - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53