Stem-loop osa-MIR5517

Accession

MI0019036

Description

Oryza sativa osa-MIR5517 precursor miRNA

Literature search

2 open access papers mention osa-MIR5517
(7 sentences)

Sequence

472 reads, 4.0 reads per million, 39 experiments

caaaucaauuUGCAUCACGGCGCAUAUGUAGaaccccguucaguugacuacaauaguaagccaAACGAAUGCAGCGUUGUGUGCcgcaauguacguacagcca
..........(((((..((((((((((((.......((((..(((.((((...)))).)))..))))......))).)))))))))..)))))..........

Structure

caaaucaauu     CA         -   AGaaccc    ca   g    c 
          UGCAU  CGGCGCAUA UGU       cguu  guu acua  
          |||||  ||||||||| |||       ||||  ||| |||| a
          augua  gcCGUGUGU GCG       GCAA  cga ugau  
accgacaugc     ac         U   -ACGUAA    ac   a    a 

Annotation confidence Low

Genome context

6: 24618621-24618723 [-]

Mature osa-miR5517-5p

• Accession: MIMAT0022151
• Description: Oryza sativa osa-miR5517-5p mature miRNA
• Sequence: 11 - UGCAUCACGGCGCAUAUGUAG - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5517-3p

• Accession: MIMAT0056230
• Description: Oryza sativa osa-miR5517-3p mature miRNA
• Sequence: 64 - AACGAAUGCAGCGUUGUGUGC - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53