miRBase entry: osa-MIR5518

Stem-loop osa-MIR5518


Accession
MI0019037
Description
Oryza sativa osa-MIR5518 precursor miRNA


Sequence

490 reads, 10.0 reads per million, 34 experiments
aaucaaggagagaauagucccgauuccUGCUUACUGCAUGCCUUAUUUggaugugcccaaauucagaccgggucacauauauggugcauuuuaauguaaaaucuagggccaaacauaaucacgauucuuugcAUACUCAAACAGGGCAUUGCAguucauugau
....(((.((.((((.......)))))).)))((((((((((((.(((((((((((((...........))).)))))...((((.(((((((...))))))...).))))..........(((....))).....))))).)))))).))))))........

Structure
aaucaaggagagaauagucccgauuccUGCUU      -      A     augugcccaaauucagaccgggucacauauauggugcauuuu 
                                ACUGCA UGCCUU UUUgg                                          a
                                |||||| |||||| |||||                                           
                                ugACGU ACGGGA AAACU                                          a
------------------------uaguuacu      U      C     CAUAcguuucuuagcacuaauacaaaccgggaucuaaaaugu 


Annotation confidence Not enough data
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Genome context
7: 9526304-9526466 [+]

Database links

Mature osa-miR5518-5p

Accession MIMAT0056231
Description Oryza sativa osa-miR5518-5p mature miRNA
Sequence 28 - UGCUUACUGCAUGCCUUAUUU - 48
Evidence experimental
unknown

Mature osa-miR5518-3p

Accession MIMAT0022152
Description Oryza sativa osa-miR5518-3p mature miRNA
Sequence 133 - AUACUCAAACAGGGCAUUGCA - 153
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53