Stem-loop osa-MIR5521

Accession

MI0019040

Description

Oryza sativa osa-MIR5521 precursor miRNA

Literature search

1 open access papers mention osa-MIR5521
(3 sentences)

Sequence

5686 reads, 52.0 reads per million, 49 experiments

augaauguucAGUGGCUGCAUAUCUGAUGAGccacgguaaaauccuugagcaaacuguucugcuuccgugccucucacagcgcugguuccagugcauaugauucagauguagaggaacaacacauaaaucgucuauAUAGCUGGAAGAGACUCGUCAUuugggaucagugaguugagcagucga
............(((((((....(((.((((.(((((..........(((((........))))))))))...)))))))((((((((((((((...((((((((((((((((.((............)).)))))))..)))))......)))))).))))))))))))......))))))).

Structure

augaauguucAG       AUAUCUGAUGAGccacgguaaaauccuugagcaaacuguucugcuuccgugccucucacag            -  cau    ------     --       g  acaac 
            UGGCUGC                                                             cgcugguuccag ug   auga      uucag  auguaga ga     a
            |||||||                                                             |||||||||||| ||   ||||      |||||  ||||||| ||      
            gcugacg                                                             gugacuaggguu AC   UGCU      AGGUC  UAuaucu cu     c
-----------a       -------------------------------------------------------aguuga            U  ---    CAGAGA     GA       g  aaaua 

Annotation confidence Low

Genome context

1: 2334077-2334260 [-]

Mature osa-miR5521-5p

• Accession: MIMAT0022155
• Description: Oryza sativa osa-miR5521-5p mature miRNA
• Sequence: 11 - AGUGGCUGCAUAUCUGAUGAG - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5521-3p

• Accession: MIMAT0056233
• Description: Oryza sativa osa-miR5521-3p mature miRNA
• Sequence: 137 - AUAGCUGGAAGAGACUCGUCAU - 158
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53