Stem-loop osa-MIR5521

Accession

MI0019040

Description

Oryza sativa osa-MIR5521 precursor miRNA

Literature search

1 open access papers mention osa-MIR5521
(3 sentences)

Sequence

augaauguucAGUGGCUGCAUAUCUGAUGAGccacgguaaaauccuugagcaaacuguucugcuuccgugccucucacagcgcugguuccagugcauaugauucagauguagaggaacaacacauaaaucgucuauauagcuggaagagacucgucauuugggaucagugaguugagcagucga
............(((((((....(((.((((.(((((..........(((((........))))))))))...)))))))((((((((((((((...((((((((((((((((.((............)).)))))))..)))))......)))))).))))))))))))......))))))).

Structure

augaauguucAG       --------------------------------------------------------------------------------------------AUAU   A    ccacgguaaaauccuugagc 
            UGGCUGC                                                                                                CUG UGAG                    a
            |||||||                                                                                                ||| ||||                     
            gcugacg                                                                                                gac acuc                    a
-----------a       aguugagugacuaggguuuacugcucagagaaggucgauauaucugcuaaauacacaacaaggagauguagacuuaguauacgugaccuuggucgc   -    uccgugccuucgucuuguca 

Annotation confidence Not enough data

Genome context

Chr1: 2334077-2334260 [-]

Mature osa-miR5521

• Accession: MIMAT0022155
• Description: Oryza sativa osa-miR5521 mature miRNA
• Sequence: 11 - AGUGGCUGCAUAUCUGAUGAG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53