miRBase entry: osa-MIR5523

Stem-loop osa-MIR5523


Accession
MI0019042
Description
Oryza sativa osa-MIR5523 precursor miRNA


Sequence

1858 reads, 8.0 reads per million, 124 experiments
uacuagaaaaCAAGUAAGUGUAAUUCCCCCUaaacauuaaaauauguugacaUGAGGAGGAACAUAUUUACUAGuuauauuguc
........(((.(((((((((..(((((((..(((((......))))).....).)).)))).))))))))).)))........

Structure
uacuagaa   A         AA    -  - ---Ua     ua 
        aaC AGUAAGUGU  UUCC CC C     aacau  a
        ||| |||||||||  |||| || |     |||||   
        uuG UCAUUUAUA  AAGG GG G     uugua  a
cuguuaua   A         -C    A  A Uacag     ua 


Annotation confidence Medium
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Genome context
4: 18205674-18205757 [-]

Database links

Mature osa-miR5523-5p

Accession MIMAT0056235
Description Oryza sativa osa-miR5523-5p mature miRNA
Sequence 11 - CAAGUAAGUGUAAUUCCCCCU - 31
Evidence experimental
unknown

Mature osa-miR5523-3p

Accession MIMAT0022157
Description Oryza sativa osa-miR5523-3p mature miRNA
Sequence 53 - UGAGGAGGAACAUAUUUACUAG - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53