Stem-loop osa-MIR5524

Accession

MI0019044

Description

Oryza sativa osa-MIR5524 precursor miRNA

Sequence

gaagaauggcgguaaucgugacauuauuucuauuaauaguaaccaaauaauauugucagaugugaucagcaaaaguaucaucaacaaagguucaaguuuguauauguuuugguuugaguaagaagauagcgaaugaaaaggaaugccccuugcauguugagggauugguauguguuaauuguuugagucaagauauuuuuguagagacuaugcuaaucgcaguuaagaaucaacaguucuagagagauauauaUGGAAAAUGUGUUCAUGACGGucuauucaau
...(((((((.(...(((((((((..(((((((.......(((((((..((((...(((((.(((..........................))).))))).))))..)))))))..........(((..(((((((......(((((((((........))))...))))).......))))))).)))...((((((((.(((((....(((.....)))...............))))).))))))))..)))))))..))).))))))).).))))))...

Structure

gaa      - g uaa      -   ua       -----------------------------------------------------------------------------------------------------------------------------------uaauagu       ua    ugu     g   ucagcaaaagua 
   gaaugg c g   ucguga cau  uuucuau                                                                                                                                          aaccaaa  auau   cagau uga            u
   |||||| | |   |||||| |||  |||||||                                                                                                                                          |||||||  ||||   ||||| |||             
   cuuauc G C   AGUACU GUG  AAAGGUa                                                                                                                                          uugguuu  uaua   guuug acu            c
uaa      u G ---      U   UA       uauauagagagaucuugacaacuaagaauugacgcuaaucguaucagagauguuuuuauagaacugaguuuguuaauuguguaugguuagggaguuguacguuccccguaaggaaaaguaagcgauagaagaaugagu       ug    --u     a   uggaaacaacua 

Annotation confidence Not enough data

Genome context

Chr9: 3278054-3278337 [+]

Mature osa-miR5524

• Accession: MIMAT0022159
• Description: Oryza sativa osa-miR5524 mature miRNA
• Sequence: 254 - UGGAAAAUGUGUUCAUGACGG - 274
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53