Stem-loop osa-MIR5525

Accession

MI0019045

Description

Oryza sativa osa-MIR5525 precursor miRNA

Sequence

3235 reads, 12.0 reads per million, 105 experiments

gauguacaagUGAACCUUGGGAGCGAUCUGAAacgaauuccuuguucucaugaaaauagucaugaaugcggccccaauguguuccaugagauugauccaucccuuuaccgcauuaaaagaaacaUUUAUCCAUGCCGACACCAAAagguugucuuccuccaaaaugaauuuuucggaucuuuuuugguuuggucucacagcagcauuu
(((((....((((((((((((((.((((((((..((((((.(((...((((((......))))))..((((((.....(((((.((((.(((.(((...((..((((......)))).))...))).)))))))..))))).....)))))).......)))...)))))))))))))).)))))))...))).))))....))))).

Structure

-     acaa    -   ---       C        ac      --c   uucucaugaaaauagucaugaau      ccaau     -c    a   u   cca  cc    cc 
 gaugu    gUGA ACC   UUGGGAG GAUCUGAA  gaauuc   uug                       gcggcc     guguu  caug gau gau   uc  uuua  g
 |||||    |||| |||   ||||||| ||||||||  ||||||   |||                       ||||||     |||||  |||| ||| |||   ||  ||||   
 uuacg    cacu ugg   gguuuuu cuaggcuu  uuuaag   aac                       uguugg     CACAG  GUAC CUA UUa   ag  aaau  c
u     acga    c   uuu       u        --      uaa   ----------------cuccuuc      aAAAC     CC    -   U   caa  -a    ua 

Annotation confidence Low

Genome context

9: 3904312-3904519 [-]

Mature osa-miR5525-5p

• Accession: MIMAT0022160
• Description: Oryza sativa osa-miR5525-5p mature miRNA
• Sequence: 11 - UGAACCUUGGGAGCGAUCUGAA - 32
• Evidence: experimental ; Illumina [1]

Mature osa-miR5525-3p

• Accession: MIMAT0056238
• Description: Oryza sativa osa-miR5525-3p mature miRNA
• Sequence: 125 - UUUAUCCAUGCCGACACCAAA - 145
• Evidence: experimental ; unknown

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53