Stem-loop osa-MIR5526

Accession

MI0019046

Description

Oryza sativa osa-MIR5526 precursor miRNA

Sequence

53 reads, 7 reads per million, 2 experiments

ggaugugggauucaaacucaagaccucucaccucagcucucaaacacauuaccauaccaucuacuacacacaucugacuuggauagagauguuuuuuuuaacuaagccuagaagcaucuuucaccaaccgauacuaaaaauaucuuuaguucuaguugguaacaccaaccuagacuaaaaauucuucuacaauucgaaccuacacauucuaagggcauauacAAAGGUAGAGUCAGGUAUGAGcucuacguua
.((((((((.((((.(((...(((.(((.((((..(((((......................................((((..((((((((((((.............))))))))))))..))))..((((.......))))((((((.(((((((((...))))).)))))))))).....(((........))).............)))))........)))))))))).))).)))).)))))))).

Structure

g        a    a   caa   c   c    ------ca     ----------------------------------------------caaacacauuaccauaccaucuacuacacacaucugac    au            uuuaa 
 gauguggg uuca acu   gac ucu accu        gcucu                                                                                    uugg  agagauguuuuu     c
 |||||||| |||| |||   ||| ||| ||||        |||||                                                                                    ||||  ||||||||||||     u
 uugcaucu GAGU UGG   CUG AGA UGGA        cggga                                                                                    aacc  uuucuacgaaga     a
a        c    A   --A   -   -    AAcauaua     aucuuacacauccaagcuuaacaucuucuuaaaaaucagauccaaccacaaugguugaucuugauuucuauaaaaaucauagcc    ac            uccga 

Annotation confidence Not enough data

Genome context

Chr10: 1584735-1584987 [+]

Mature osa-miR5526

• Accession: MIMAT0022161
• Description: Oryza sativa osa-miR5526 mature miRNA
• Sequence: 223 - AAAGGUAGAGUCAGGUAUGAG - 243
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53